Barr, Justinn, Rudolf Gilmutdinov, Linus Wang, Yulii Shidlovskii, and Paul Schedl. (2019) 2019. “The CPEB Protein Orb Specifies Oocyte Fate by a 3’UTR-Dependent Autoregulatory Loop”. Genetics 213 (4): 1431-46. doi:10.1534/genetics.119.302687.

Postika, Nikolay, Mario Metzler, Markus Affolter, Martin Müller, Paul Schedl, Pavel Georgiev, and Olga Kyrchanova. (2018) 2018. “Boundaries Mediate Long-Distance Interactions Between Enhancers and Promoters in the Drosophila Bithorax Complex”. PLoS Genet 14 (12): e1007702. doi:10.1371/journal.pgen.1007702.

Sharma, Aditi, Sudipta Halder, Martina Felix, Khairun Nisaa, Girish Deshpande, and Mohit Prasad. (2018) 2018. “Insulin Signaling Modulates Border Cell Movement in Oogenesis”. Development 145 (14). doi:10.1242/dev.166165.

Shukla, Vallari, Neena Dhiman, Prajna Nayak, Neelesh Dahanukar, Girish Deshpande, and Girish Ratnaparkhi. (2018) 2018. “Stonewall and Brickwall: Two Partially Redundant Determinants Required for the Maintenance of Female Germline in ”. G3 (Bethesda) 8 (6): 2027-41. doi:10.1534/g3.118.200192.

Colonnetta, Megan, Yogesh Goyal, Heath Johnson, Sapna Syal, Paul Schedl, and Girish Deshpande. (2022) 2022. “Preformation and Epigenesis Converge to Specify Primordial Germ Cell Fate in the Early Drosophila Embryo”. PLoS Genet 18 (1): e1010002. doi:10.1371/journal.pgen.1010002.

Diegmiller, Rocky, Lun Zhang, Marcio Gameiro, Justinn Barr, Jasmin Imran Alsous, Paul Schedl, Stanislav Shvartsman, and Konstantin Mischaikow. (2021) 2021. “Mapping Parameter Spaces of Biological Switches”. PLoS Comput Biol 17 (2): e1008711. doi:10.1371/journal.pcbi.1008711.

Colonnetta, Megan, Lauren Lym, Lillian Wilkins, Gretchen Kappes, Elias Castro, Pearl Ryder, Paul Schedl, Dorothy Lerit, and Girish Deshpande. (2021) 2021. “Antagonism Between and Torso Receptor Regulates Transcriptional Quiescence Underlying Germline Soma Distinction”. Elife 10. doi:10.7554/eLife.54346.

Deshpande, Girish, Gretchen Calhoun, Timothy Jinks, Alexandros Polydorides, and Paul Schedl. (2005) 2005. “Nanos Downregulates Transcription and Modulates CTD Phosphorylation in the Soma of Early Drosophila Embryos.”. Mech Dev 122 (5): 645-57. doi:10.1016/j.mod.2004.12.009.

Costa, Alexandre, Yan Wang, Thomas Dockendorff, Hediye Erdjument-Bromage, Paul Tempst, Paul Schedl, and Thomas Jongens. (2005) 2005. “The Drosophila Fragile X Protein Functions As a Negative Regulator in the Orb Autoregulatory Pathway.”. Dev Cell 8 (3): 331-42. doi:10.1016/j.devcel.2005.01.011.

Shanower, Gregory, Martin Muller, Jason Blanton, Viktor Honti, Henrik Gyurkovics, and Paul Schedl. (2005) 2005. “Characterization of the Grappa Gene, the Drosophila Histone H3 Lysine 79 Methyltransferase.”. Genetics 169 (1): 173-84. doi:10.1534/genetics.104.033191.

Greenberg, Anthony, Judith Yanowitz, and Paul Schedl. (2004) 2004. “The Drosophila GAGA Factor Is Required for Dosage Compensation in Males and for the Formation of the Male-Specific-Lethal Complex Chromatin Entry Site at 12DE.”. Genetics 166 (1): 279-89.

Jinks, Timothy Morgan, Gretchen Calhoun, and Paul Schedl. (2003) 2003. “Functional Conservation of the Sex-Lethal Sex Determining Promoter, Sxl-Pe, in Drosophila Virilis.”. Dev Genes Evol 213 (4): 155-65. doi:10.1007/s00427-003-0304-1.

Deshpande, Girish, Anuradha Godishala, and Paul Schedl. (2009) 2009. “Ggamma1, a Downstream Target for the Hmgcr-Isoprenoid Biosynthetic Pathway, Is Required for Releasing the Hedgehog Ligand and Directing Germ Cell Migration.”. PLoS Genet 5 (1): e1000333. doi:10.1371/journal.pgen.1000333.

Wong, Li Chin, and Paul Schedl. (2006) 2006. “Dissection of Drosophila Ovaries.”. J Vis Exp, no. 1: 52. doi:10.3791/52.

Penn, Jill, Patricia Graham, Girish Deshpande, Gretchen Calhoun, Ahmad Sami Chaouki, Helen Salz, and Paul Schedl. (2008) 2008. “Functioning of the Drosophila Wilms’-Tumor-1-Associated Protein Homolog, Fl(2)d, in Sex-Lethal-Dependent Alternative Splicing.”. Genetics 178 (2): 737-48. doi:10.1534/genetics.107.081679.

Deshpande, Girish, Nilay Sethi, and Paul Schedl. (2007) 2007. “Toutvelu, a Regulator of Heparan Sulfate Proteoglycan Biosynthesis, Controls Guidance Cues for Germ-Cell Migration.”. Genetics 176 (2): 905-12. doi:10.1534/genetics.107.071415.

Penn, Jill, and Paul Schedl. (2007) 2007. “The Master Switch Gene Sex-Lethal Promotes Female Development by Negatively Regulating the N-Signaling Pathway.”. Dev Cell 12 (2): 275-86. doi:10.1016/j.devcel.2007.01.009.

Hafer, Nathaniel, Shuwa Xu, Krishna Moorthi Bhat, and Paul Schedl. (2011) 2011. “The Drosophila CPEB Protein Orb2 Has a Novel Expression Pattern and Is Important for Asymmetric Cell Division and Nervous System Function.”. Genetics 189 (3): 907-21. doi:10.1534/genetics.110.123646.

Graham, Patricia, Judith Yanowitz, Jill Penn, Girish Deshpande, and Paul Schedl. (2011) 2011. “The Translation Initiation Factor eIF4E Regulates the Sex-Specific Expression of the Master Switch Gene Sxl in Drosophila Melanogaster.”. PLoS Genet 7 (7): e1002185. doi:10.1371/journal.pgen.1002185.

Kappes, Gretchen, Girish Deshpande, Brett Mulvey, Jamila Horabin, and Paul Schedl. (2011) 2011. “The Drosophila Myc Gene, Diminutive, Is a Positive Regulator of the Sex-Lethal Establishment Promoter, Sxl-Pe.”. Proc Natl Acad Sci U S A 108 (4): 1543-8. doi:10.1073/pnas.1017006108.

Costa, Alexandre, Cecilia Pazman, Kristina Sinsimer, Li Chin Wong, Ian McLeod, John Yates, Susan Haynes, and Paul Schedl. 2013. “Rasputin Functions As a Positive Regulator of Orb in Drosophila Oogenesis.”. PLoS One 8 (9): e72864. doi:10.1371/journal.pone.0072864.

Wong, Li Chin, and Paul Schedl. 2011. “Cup Blocks the Precocious Activation of the Orb Autoregulatory Loop.”. PLoS One 6 (12): e28261. doi:10.1371/journal.pone.0028261.

Wong, Li Chin, Alexandre Costa, Ian McLeod, Ali Sarkeshik, John Yates, Saw Kyin, David Perlman, and Paul Schedl. 2011. “The Functioning of the Drosophila CPEB Protein Orb Is Regulated by Phosphorylation and Requires Casein Kinase 2 Activity.”. PLoS One 6 (9): e24355. doi:10.1371/journal.pone.0024355.

Bonchuk, Artem, Oksana Maksimenko, Olga Kyrchanova, Tatyana Ivlieva, Vladic Mogila, Girish Deshpande, Daniel Wolle, Paul Schedl, and Pavel Georgiev. (2015) 2015. “Functional Role of Dimerization and CP190 Interacting Domains of CTCF Protein in Drosophila Melanogaster.”. BMC Biol 13: 63. doi:10.1186/s12915-015-0168-7.

Barr, Justinn, Daniel Gordon, Paul Schedl, and Girish Deshpande. (2015) 2015. “Xenotransplantation Exposes the Etiology of Azoospermia Factor (AZF) Induced Male Sterility.”. Bioessays 37 (3): 278-83. doi:10.1002/bies.201400134.

Kyrchanova, Olga, Vladic Mogila, Daniel Wolle, Girish Deshpande, Alexander Parshikov, Fabienne Cléard, Francois Karch, Paul Schedl, and Pavel Georgiev. (2016) 2016. “Functional Dissection of the Blocking and Bypass Activities of the Fab-8 Boundary in the Drosophila Bithorax Complex.”. PLoS Genet 12 (7): e1006188. doi:10.1371/journal.pgen.1006188.

Deshpande, Girish, Ali Nouri, and Paul Schedl. (2016) 2016. “Wnt Signaling in Sexual Dimorphism.”. Genetics 202 (2): 661-73. doi:10.1534/genetics.115.177857.