Chetverina, Darya, Maksim Erokhin, and Paul Schedl. (2021) 2021. “GAGA Factor: A Multifunctional Pioneering Chromatin Protein”. Cell Mol Life Sci 78 (9): 4125-41. doi:10.1007/s00018-021-03776-z.

Sharma, Aditi, Sudipta Halder, Martina Felix, Khairun Nisaa, Girish Deshpande, and Mohit Prasad. (2018) 2018. “Insulin Signaling Modulates Border Cell Movement in Oogenesis”. Development 145 (14). doi:10.1242/dev.166165.

Shidlovskii, Yulii, Oleg Bylino, Alexander Shaposhnikov, Zaur Kachaev, Lyubov Lebedeva, Valeria Kolesnik, Diego Amendola, et al. (2021) 2021. “Subunits of the PBAP Chromatin Remodeler Are Capable of Mediating Enhancer-Driven Transcription in ”. Int J Mol Sci 22 (6). doi:10.3390/ijms22062856.

Shukla, Vallari, Neena Dhiman, Prajna Nayak, Neelesh Dahanukar, Girish Deshpande, and Girish Ratnaparkhi. (2018) 2018. “Stonewall and Brickwall: Two Partially Redundant Determinants Required for the Maintenance of Female Germline in ”. G3 (Bethesda) 8 (6): 2027-41. doi:10.1534/g3.118.200192.

Postika, Nikolay, Paul Schedl, Pavel Georgiev, and Olga Kyrchanova. (2021) 2021. “Mapping of Functional Elements of the Fab-6 Boundary Involved in the Regulation of the Abd-B Hox Gene in Drosophila Melanogaster”. Sci Rep 11 (1): 4156. doi:10.1038/s41598-021-83734-8.

Kaye, Emily, Amina Kurbidaeva, Daniel Wolle, Tsutomu Aoki, Paul Schedl, and Erica Larschan. (2017) 2017. “Drosophila Dosage Compensation Loci Associate With a Boundary-Forming Insulator Complex”. Mol Cell Biol 37 (21). doi:10.1128/MCB.00253-17.

Colonnetta, Megan, Lauren Lym, Lillian Wilkins, Gretchen Kappes, Elias Castro, Pearl Ryder, Paul Schedl, Dorothy Lerit, and Girish Deshpande. (2021) 2021. “Antagonism Between and Torso Receptor Regulates Transcriptional Quiescence Underlying Germline Soma Distinction”. Elife 10. doi:10.7554/eLife.54346.

Kyrchanova, Olga, Nikolay Zolotarev, Vladic Mogila, Oksana Maksimenko, Paul Schedl, and Pavel Georgiev. (2017) 2017. “Architectural Protein Pita Cooperates With DCTCF in Organization of Functional Boundaries in Bithorax Complex”. Development 144 (14): 2663-72. doi:10.1242/dev.149815.

Syal, Sapna, Chris Ng, Yunah Kim, Javier Janbieh, Shubha Govind, and Girish Deshpande. (2020) 2020. “Reactive Oxygen Species Signaling in Primordial Germ Cell Development in Drosophila Embryos”. Genesis 58 (6): e23362. doi:10.1002/dvg.23362.

Kyrchanova, Olga, Oksana Maksimenko, Airat Ibragimov, Vladimir Sokolov, Nikolay Postika, Maria Lukyanova, Paul Schedl, and Pavel Georgiev. (2020) 2020. “The Insulator Functions of the Polydactyl C2H2 Zinc Finger Protein CTCF: Necessity versus Sufficiency”. Sci Adv 6 (13): eaaz3152. doi:10.1126/sciadv.aaz3152.

Barr, Justinn, Rudolf Gilmutdinov, Linus Wang, Yulii Shidlovskii, and Paul Schedl. (2019) 2019. “The CPEB Protein Orb Specifies Oocyte Fate by a 3’UTR-Dependent Autoregulatory Loop”. Genetics 213 (4): 1431-46. doi:10.1534/genetics.119.302687.

Kyrchanova, Olga, Daniel Wolle, Marat Sabirov, Amina Kurbidaeva, Tsutomu Aoki, Oksana Maksimenko, Maria Kyrchanova, Pavel Georgiev, and Paul Schedl. (2019) 2019. “Distinct Elements Confer the Blocking and Bypass Functions of the Bithorax Boundary”. Genetics 213 (3): 865-76. doi:10.1534/genetics.119.302694.

Kyrchanova, Olga, Marat Sabirov, Vladic Mogila, Amina Kurbidaeva, Nikolay Postika, Oksana Maksimenko, Paul Schedl, and Pavel Georgiev. (2019) 2019. “Complete Reconstitution of Bypass and Blocking Functions in a Minimal Artificial Insulator from Complex”. Proc Natl Acad Sci U S A 116 (27): 13462-67. doi:10.1073/pnas.1907190116.

Bialistoky, Tzofia, Diane Manry, Peyton Smith, Christopher Ng, Yunah Kim, Sol Zamir, Victoria Moyal, et al. (2019) 2019. “Functional Analysis of Niemann-Pick Disease Type C Family Protein, NPC1a, in ”. Development 146 (10). doi:10.1242/dev.168427.

Kachaev, Zaur, Lyubov Lebedeva, Alexander Shaposhnikov, James Moresco, John Yates, Paul Schedl, and Yulii Shidlovskii. (2019) 2019. “Paip2 Cooperates With Cbp80 at an Active Promoter and Participates in RNA Polymerase II Phosphorylation in Drosophila”. FEBS Lett 593 (10): 1102-12. doi:10.1002/1873-3468.13391.

Colonnetta, Megan, Yogesh Goyal, Heath Johnson, Sapna Syal, Paul Schedl, and Girish Deshpande. (2022) 2022. “Preformation and Epigenesis Converge to Specify Primordial Germ Cell Fate in the Early Drosophila Embryo”. PLoS Genet 18 (1): e1010002. doi:10.1371/journal.pgen.1010002.

Fedotova, Anna, Chaevia Clendinen, Artem Bonchuk, Vladic Mogila, Tsutomu Aoki, Pavel Georgiev, and Paul Schedl. (2019) 2019. “Functional Dissection of the Developmentally Restricted BEN Domain Chromatin Boundary Factor Insensitive”. Epigenetics Chromatin 12 (1): 2. doi:10.1186/s13072-018-0249-2.

Colonnetta, Megan, Juan Abrahante, Paul Schedl, Daryl Gohl, and Girish Deshpande. (2021) 2021. “CLAMP Regulates Zygotic Genome Activation in Drosophila Embryos”. Genetics 219 (2). doi:10.1093/genetics/iyab107.

Postika, Nikolay, Mario Metzler, Markus Affolter, Martin Müller, Paul Schedl, Pavel Georgiev, and Olga Kyrchanova. (2018) 2018. “Boundaries Mediate Long-Distance Interactions Between Enhancers and Promoters in the Drosophila Bithorax Complex”. PLoS Genet 14 (12): e1007702. doi:10.1371/journal.pgen.1007702.

Postika, Nikolay, Paul Schedl, Pavel Georgiev, and Olga Kyrchanova. (2021) 2021. “Redundant Enhancers in the Iab-5 Domain Cooperatively Activate Abd-B in the A5 and A6 Abdominal Segments of Drosophila”. Development 148 (19). doi:10.1242/dev.199827.

Fedotova, Anna, Tsutomu Aoki, Mikaël Rossier, Rakesh Kumar Mishra, Chaevia Clendinen, Olga Kyrchanova, Daniel Wolle, et al. (2018) 2018. “The BEN Domain Protein Insensitive Binds to the Chromatin Boundary To Establish Proper Segmental Identity in ”. Genetics 210 (2): 573-85. doi:10.1534/genetics.118.301259.

Gilmutdinov, Rudolf, Eugene Kozlov, Konstantin Yakovlev, Ludmila Olenina, Alexei Kotov, Justinn Barr, Mariya Zhukova, Paul Schedl, and Yulii Shidlovskii. (2021) 2021. “The 3’UTR of the Drosophila CPEB Translation Factor Gene Orb2 Plays a Crucial Role in Spermatogenesis”. Development 148 (17). doi:10.1242/dev.198788.

Kyrchanova, Olga, Amina Kurbidaeva, Marat Sabirov, Nikolay Postika, Daniel Wolle, Tsutomu Aoki, Oksana Maksimenko, Vladic Mogila, Paul Schedl, and Pavel Georgiev. (2018) 2018. “The Bithorax Complex Iab-7 Polycomb Response Element Has a Novel Role in the Functioning of the Fab-7 Chromatin Boundary”. PLoS Genet 14 (8): e1007442. doi:10.1371/journal.pgen.1007442.

Erokhin, Maksim, Fedor Gorbenko, Dmitry Lomaev, Marina Yu Mazina, Anna Mikhailova, Azat Garaev, Aleksander Parshikov, et al. (2021) 2021. “Boundaries Potentiate Polycomb Response Element-Mediated Silencing”. BMC Biol 19 (1): 113. doi:10.1186/s12915-021-01047-8.

Kachaev, Zaur, Lyubov Lebedeva, Eugene Kozlov, Ilya Toropygin, Paul Schedl, and Yulii Shidlovskii. 2018. “Paip2 Is Localized to Active Promoters and Loaded onto Nascent MRNA in Drosophila”. Cell Cycle 17 (14): 1708-20. doi:10.1080/15384101.2018.1496738.

Graham, Patricia, Jill Penn, and Paul Schedl. (2003) 2003. “Masters Change, Slaves Remain.”. Bioessays 25 (1): 1-4. doi:10.1002/bies.10207.

Deshpande, Girish, Gretchen Calhoun, and Paul Schedl. (2005) 2005. “Drosophila Argonaute-2 Is Required Early in Embryogenesis for the Assembly of Centric Centromeric Heterochromatin, Nuclear Division, Nuclear Migration, and Germ-Cell Formation.”. Genes Dev 19 (14): 1680-5. doi:10.1101/gad.1316805.

Deshpande, Girish, Gretchen Calhoun, Timothy Jinks, Alexandros Polydorides, and Paul Schedl. (2005) 2005. “Nanos Downregulates Transcription and Modulates CTD Phosphorylation in the Soma of Early Drosophila Embryos.”. Mech Dev 122 (5): 645-57. doi:10.1016/j.mod.2004.12.009.

Costa, Alexandre, Yan Wang, Thomas Dockendorff, Hediye Erdjument-Bromage, Paul Tempst, Paul Schedl, and Thomas Jongens. (2005) 2005. “The Drosophila Fragile X Protein Functions As a Negative Regulator in the Orb Autoregulatory Pathway.”. Dev Cell 8 (3): 331-42. doi:10.1016/j.devcel.2005.01.011.

Schweinsberg, Susan, Kirsten Hagstrom, Daryl Gohl, Paul Schedl, Ram Kumar, Rakesh Mishra, and Francois Karch. (2004) 2004. “The Enhancer-Blocking Activity of the Fab-7 Boundary from the Drosophila Bithorax Complex Requires GAGA-Factor-Binding Sites.”. Genetics 168 (3): 1371-84. doi:10.1534/genetics.104.029561.

Shanower, Gregory, Martin Muller, Jason Blanton, Viktor Honti, Henrik Gyurkovics, and Paul Schedl. (2005) 2005. “Characterization of the Grappa Gene, the Drosophila Histone H3 Lysine 79 Methyltransferase.”. Genetics 169 (1): 173-84. doi:10.1534/genetics.104.033191.

Greenberg, Anthony, Judith Yanowitz, and Paul Schedl. (2004) 2004. “The Drosophila GAGA Factor Is Required for Dosage Compensation in Males and for the Formation of the Male-Specific-Lethal Complex Chromatin Entry Site at 12DE.”. Genetics 166 (1): 279-89.

Deshpande, Girish, Gretchen Calhoun, and Paul Schedl. (2004) 2004. “Overlapping Mechanisms Function to Establish Transcriptional Quiescence in the Embryonic Drosophila Germline.”. Development 131 (6): 1247-57. doi:10.1242/dev.01004.

Jinks, Timothy Morgan, Gretchen Calhoun, and Paul Schedl. (2003) 2003. “Functional Conservation of the Sex-Lethal Sex Determining Promoter, Sxl-Pe, in Drosophila Virilis.”. Dev Genes Evol 213 (4): 155-65. doi:10.1007/s00427-003-0304-1.

Blanton, Jason, Miklos Gaszner, and Paul Schedl. (2003) 2003. “Protein:Protein Interactions and the Pairing of Boundary Elements in Vivo.”. Genes Dev 17 (5): 664-75. doi:10.1101/gad.1052003.

Deshpande, Girish, and Paul Schedl. (2005) 2005. “HMGCoA Reductase Potentiates Hedgehog Signaling in Drosophila Melanogaster.”. Dev Cell 9 (5): 629-38. doi:10.1016/j.devcel.2005.09.014.

Deshpande, Girish, Anuradha Godishala, and Paul Schedl. (2009) 2009. “Ggamma1, a Downstream Target for the Hmgcr-Isoprenoid Biosynthetic Pathway, Is Required for Releasing the Hedgehog Ligand and Directing Germ Cell Migration.”. PLoS Genet 5 (1): e1000333. doi:10.1371/journal.pgen.1000333.

Tan, Lihua, Paul Schedl, Ho-Juhn Song, Dan Garza, and Mary Konsolaki. 2008. “The Toll-->NFkappaB Signaling Pathway Mediates the Neuropathological Effects of the Human Alzheimer’s Abeta42 Polypeptide in Drosophila.”. PLoS One 3 (12): e3966. doi:10.1371/journal.pone.0003966.

Penn, Jill, Patricia Graham, Girish Deshpande, Gretchen Calhoun, Ahmad Sami Chaouki, Helen Salz, and Paul Schedl. (2008) 2008. “Functioning of the Drosophila Wilms’-Tumor-1-Associated Protein Homolog, Fl(2)d, in Sex-Lethal-Dependent Alternative Splicing.”. Genetics 178 (2): 737-48. doi:10.1534/genetics.107.081679.

Aoki, Tsutomu, Susan Schweinsberg, Julia Manasson, and Paul Schedl. (2008) 2008. “A Stage-Specific Factor Confers Fab-7 Boundary Activity During Early Embryogenesis in Drosophila.”. Mol Cell Biol 28 (3): 1047-60. doi:10.1128/MCB.01622-07.

Deshpande, Girish, Nilay Sethi, and Paul Schedl. (2007) 2007. “Toutvelu, a Regulator of Heparan Sulfate Proteoglycan Biosynthesis, Controls Guidance Cues for Germ-Cell Migration.”. Genetics 176 (2): 905-12. doi:10.1534/genetics.107.071415.

Penn, Jill, and Paul Schedl. (2007) 2007. “The Master Switch Gene Sex-Lethal Promotes Female Development by Negatively Regulating the N-Signaling Pathway.”. Dev Cell 12 (2): 275-86. doi:10.1016/j.devcel.2007.01.009.

Deshpande, Girish, Gretchen Calhoun, and Paul Schedl. (2006) 2006. “The Drosophila Fragile X Protein DFMR1 Is Required During Early Embryogenesis for Pole Cell Formation and Rapid Nuclear Division Cycles.”. Genetics 174 (3): 1287-98. doi:10.1534/genetics.106.062414.

Costa, Alexandre, Cecilia Pazman, Kristina Sinsimer, Li Chin Wong, Ian McLeod, John Yates, Susan Haynes, and Paul Schedl. 2013. “Rasputin Functions As a Positive Regulator of Orb in Drosophila Oogenesis.”. PLoS One 8 (9): e72864. doi:10.1371/journal.pone.0072864.

Deshpande, Girish, Keren Zhou, Joy Wan, Jana Friedrich, Nicholas Jourjine, Daniel Smith, and Paul Schedl. 2013. “The Hedgehog Pathway Gene Shifted Functions Together With the Hmgcr-Dependent Isoprenoid Biosynthetic Pathway to Orchestrate Germ Cell Migration.”. PLoS Genet 9 (9): e1003720. doi:10.1371/journal.pgen.1003720.

Aoki, Tsutomu, Ali Sarkeshik, John Yates, and Paul Schedl. (2012) 2012. “Elba, a Novel Developmentally Regulated Chromatin Boundary Factor Is a Hetero-Tripartite DNA Binding Complex.”. Elife 1: e00171. doi:10.7554/eLife.00171.

Deshpande, Girish, Emma Spady, Joe Goodhouse, and Paul Schedl. (2012) 2012. “Maintaining Sufficient Nanos Is a Critical Function for Polar Granule Component in the Specification of Primordial Germ Cells.”. G3 (Bethesda) 2 (11): 1397-403. doi:10.1534/g3.112.004192.

Wong, Li Chin, and Paul Schedl. 2011. “Cup Blocks the Precocious Activation of the Orb Autoregulatory Loop.”. PLoS One 6 (12): e28261. doi:10.1371/journal.pone.0028261.

Wong, Li Chin, Alexandre Costa, Ian McLeod, Ali Sarkeshik, John Yates, Saw Kyin, David Perlman, and Paul Schedl. 2011. “The Functioning of the Drosophila CPEB Protein Orb Is Regulated by Phosphorylation and Requires Casein Kinase 2 Activity.”. PLoS One 6 (9): e24355. doi:10.1371/journal.pone.0024355.

Hafer, Nathaniel, Shuwa Xu, Krishna Moorthi Bhat, and Paul Schedl. (2011) 2011. “The Drosophila CPEB Protein Orb2 Has a Novel Expression Pattern and Is Important for Asymmetric Cell Division and Nervous System Function.”. Genetics 189 (3): 907-21. doi:10.1534/genetics.110.123646.