Bialistoky, Tzofia, Diane Manry, Peyton Smith, Christopher Ng, Yunah Kim, Sol Zamir, Victoria Moyal, et al. (2019) 2019. “Functional Analysis of Niemann-Pick Disease Type C Family Protein, NPC1a, in ”. Development 146 (10). doi:10.1242/dev.168427.

Kachaev, Zaur, Lyubov Lebedeva, Alexander Shaposhnikov, James Moresco, John Yates, Paul Schedl, and Yulii Shidlovskii. (2019) 2019. “Paip2 Cooperates With Cbp80 at an Active Promoter and Participates in RNA Polymerase II Phosphorylation in Drosophila”. FEBS Lett 593 (10): 1102-12. doi:10.1002/1873-3468.13391.

Postika, Nikolay, Mario Metzler, Markus Affolter, Martin Müller, Paul Schedl, Pavel Georgiev, and Olga Kyrchanova. (2018) 2018. “Boundaries Mediate Long-Distance Interactions Between Enhancers and Promoters in the Drosophila Bithorax Complex”. PLoS Genet 14 (12): e1007702. doi:10.1371/journal.pgen.1007702.

Kachaev, Zaur, Lyubov Lebedeva, Eugene Kozlov, Ilya Toropygin, Paul Schedl, and Yulii Shidlovskii. 2018. “Paip2 Is Localized to Active Promoters and Loaded onto Nascent MRNA in Drosophila”. Cell Cycle 17 (14): 1708-20. doi:10.1080/15384101.2018.1496738.

Sharma, Aditi, Sudipta Halder, Martina Felix, Khairun Nisaa, Girish Deshpande, and Mohit Prasad. (2018) 2018. “Insulin Signaling Modulates Border Cell Movement in Oogenesis”. Development 145 (14). doi:10.1242/dev.166165.

Shukla, Vallari, Neena Dhiman, Prajna Nayak, Neelesh Dahanukar, Girish Deshpande, and Girish Ratnaparkhi. (2018) 2018. “Stonewall and Brickwall: Two Partially Redundant Determinants Required for the Maintenance of Female Germline in ”. G3 (Bethesda) 8 (6): 2027-41. doi:10.1534/g3.118.200192.

Kaye, Emily, Amina Kurbidaeva, Daniel Wolle, Tsutomu Aoki, Paul Schedl, and Erica Larschan. (2017) 2017. “Drosophila Dosage Compensation Loci Associate With a Boundary-Forming Insulator Complex”. Mol Cell Biol 37 (21). doi:10.1128/MCB.00253-17.

Colonnetta, Megan, Yogesh Goyal, Heath Johnson, Sapna Syal, Paul Schedl, and Girish Deshpande. (2022) 2022. “Preformation and Epigenesis Converge to Specify Primordial Germ Cell Fate in the Early Drosophila Embryo”. PLoS Genet 18 (1): e1010002. doi:10.1371/journal.pgen.1010002.

Kyrchanova, Olga, Nikolay Zolotarev, Vladic Mogila, Oksana Maksimenko, Paul Schedl, and Pavel Georgiev. (2017) 2017. “Architectural Protein Pita Cooperates With DCTCF in Organization of Functional Boundaries in Bithorax Complex”. Development 144 (14): 2663-72. doi:10.1242/dev.149815.

Colonnetta, Megan, Juan Abrahante, Paul Schedl, Daryl Gohl, and Girish Deshpande. (2021) 2021. “CLAMP Regulates Zygotic Genome Activation in Drosophila Embryos”. Genetics 219 (2). doi:10.1093/genetics/iyab107.

Postika, Nikolay, Paul Schedl, Pavel Georgiev, and Olga Kyrchanova. (2021) 2021. “Redundant Enhancers in the Iab-5 Domain Cooperatively Activate Abd-B in the A5 and A6 Abdominal Segments of Drosophila”. Development 148 (19). doi:10.1242/dev.199827.

Shidlovskii, Yulii, Oleg Bylino, Alexander Shaposhnikov, Zaur Kachaev, Lyubov Lebedeva, Valeria Kolesnik, Diego Amendola, et al. (2021) 2021. “Subunits of the PBAP Chromatin Remodeler Are Capable of Mediating Enhancer-Driven Transcription in ”. Int J Mol Sci 22 (6). doi:10.3390/ijms22062856.

Postika, Nikolay, Paul Schedl, Pavel Georgiev, and Olga Kyrchanova. (2021) 2021. “Mapping of Functional Elements of the Fab-6 Boundary Involved in the Regulation of the Abd-B Hox Gene in Drosophila Melanogaster”. Sci Rep 11 (1): 4156. doi:10.1038/s41598-021-83734-8.

Colonnetta, Megan, Lauren Lym, Lillian Wilkins, Gretchen Kappes, Elias Castro, Pearl Ryder, Paul Schedl, Dorothy Lerit, and Girish Deshpande. (2021) 2021. “Antagonism Between and Torso Receptor Regulates Transcriptional Quiescence Underlying Germline Soma Distinction”. Elife 10. doi:10.7554/eLife.54346.

Syal, Sapna, Chris Ng, Yunah Kim, Javier Janbieh, Shubha Govind, and Girish Deshpande. (2020) 2020. “Reactive Oxygen Species Signaling in Primordial Germ Cell Development in Drosophila Embryos”. Genesis 58 (6): e23362. doi:10.1002/dvg.23362.

Barr, Justinn, Rudolf Gilmutdinov, Linus Wang, Yulii Shidlovskii, and Paul Schedl. (2019) 2019. “The CPEB Protein Orb Specifies Oocyte Fate by a 3’UTR-Dependent Autoregulatory Loop”. Genetics 213 (4): 1431-46. doi:10.1534/genetics.119.302687.

Kyrchanova, Olga, Daniel Wolle, Marat Sabirov, Amina Kurbidaeva, Tsutomu Aoki, Oksana Maksimenko, Maria Kyrchanova, Pavel Georgiev, and Paul Schedl. (2019) 2019. “Distinct Elements Confer the Blocking and Bypass Functions of the Bithorax Boundary”. Genetics 213 (3): 865-76. doi:10.1534/genetics.119.302694.

Deshpande, Girish, Gretchen Calhoun, Timothy Jinks, Alexandros Polydorides, and Paul Schedl. (2005) 2005. “Nanos Downregulates Transcription and Modulates CTD Phosphorylation in the Soma of Early Drosophila Embryos.”. Mech Dev 122 (5): 645-57. doi:10.1016/j.mod.2004.12.009.

Costa, Alexandre, Yan Wang, Thomas Dockendorff, Hediye Erdjument-Bromage, Paul Tempst, Paul Schedl, and Thomas Jongens. (2005) 2005. “The Drosophila Fragile X Protein Functions As a Negative Regulator in the Orb Autoregulatory Pathway.”. Dev Cell 8 (3): 331-42. doi:10.1016/j.devcel.2005.01.011.

Shanower, Gregory, Martin Muller, Jason Blanton, Viktor Honti, Henrik Gyurkovics, and Paul Schedl. (2005) 2005. “Characterization of the Grappa Gene, the Drosophila Histone H3 Lysine 79 Methyltransferase.”. Genetics 169 (1): 173-84. doi:10.1534/genetics.104.033191.

Greenberg, Anthony, Judith Yanowitz, and Paul Schedl. (2004) 2004. “The Drosophila GAGA Factor Is Required for Dosage Compensation in Males and for the Formation of the Male-Specific-Lethal Complex Chromatin Entry Site at 12DE.”. Genetics 166 (1): 279-89.

Deshpande, Girish, Gretchen Calhoun, and Paul Schedl. (2004) 2004. “Overlapping Mechanisms Function to Establish Transcriptional Quiescence in the Embryonic Drosophila Germline.”. Development 131 (6): 1247-57. doi:10.1242/dev.01004.

Jinks, Timothy Morgan, Gretchen Calhoun, and Paul Schedl. (2003) 2003. “Functional Conservation of the Sex-Lethal Sex Determining Promoter, Sxl-Pe, in Drosophila Virilis.”. Dev Genes Evol 213 (4): 155-65. doi:10.1007/s00427-003-0304-1.

Deshpande, Girish, and Paul Schedl. (2005) 2005. “HMGCoA Reductase Potentiates Hedgehog Signaling in Drosophila Melanogaster.”. Dev Cell 9 (5): 629-38. doi:10.1016/j.devcel.2005.09.014.

Hafer, Nathaniel, and Paul Schedl. (2006) 2006. “Dissection of Larval CNS in Drosophila Melanogaster.”. J Vis Exp, no. 1: 85. doi:10.3791/85.

Penn, Jill, Patricia Graham, Girish Deshpande, Gretchen Calhoun, Ahmad Sami Chaouki, Helen Salz, and Paul Schedl. (2008) 2008. “Functioning of the Drosophila Wilms’-Tumor-1-Associated Protein Homolog, Fl(2)d, in Sex-Lethal-Dependent Alternative Splicing.”. Genetics 178 (2): 737-48. doi:10.1534/genetics.107.081679.

Aoki, Tsutomu, Susan Schweinsberg, Julia Manasson, and Paul Schedl. (2008) 2008. “A Stage-Specific Factor Confers Fab-7 Boundary Activity During Early Embryogenesis in Drosophila.”. Mol Cell Biol 28 (3): 1047-60. doi:10.1128/MCB.01622-07.

Deshpande, Girish, Nilay Sethi, and Paul Schedl. (2007) 2007. “Toutvelu, a Regulator of Heparan Sulfate Proteoglycan Biosynthesis, Controls Guidance Cues for Germ-Cell Migration.”. Genetics 176 (2): 905-12. doi:10.1534/genetics.107.071415.

Penn, Jill, and Paul Schedl. (2007) 2007. “The Master Switch Gene Sex-Lethal Promotes Female Development by Negatively Regulating the N-Signaling Pathway.”. Dev Cell 12 (2): 275-86. doi:10.1016/j.devcel.2007.01.009.

Deshpande, Girish, Keren Zhou, Joy Wan, Jana Friedrich, Nicholas Jourjine, Daniel Smith, and Paul Schedl. 2013. “The Hedgehog Pathway Gene Shifted Functions Together With the Hmgcr-Dependent Isoprenoid Biosynthetic Pathway to Orchestrate Germ Cell Migration.”. PLoS Genet 9 (9): e1003720. doi:10.1371/journal.pgen.1003720.

Aoki, Tsutomu, Ali Sarkeshik, John Yates, and Paul Schedl. (2012) 2012. “Elba, a Novel Developmentally Regulated Chromatin Boundary Factor Is a Hetero-Tripartite DNA Binding Complex.”. Elife 1: e00171. doi:10.7554/eLife.00171.

Wong, Li Chin, Alexandre Costa, Ian McLeod, Ali Sarkeshik, John Yates, Saw Kyin, David Perlman, and Paul Schedl. 2011. “The Functioning of the Drosophila CPEB Protein Orb Is Regulated by Phosphorylation and Requires Casein Kinase 2 Activity.”. PLoS One 6 (9): e24355. doi:10.1371/journal.pone.0024355.

Hafer, Nathaniel, Shuwa Xu, Krishna Moorthi Bhat, and Paul Schedl. (2011) 2011. “The Drosophila CPEB Protein Orb2 Has a Novel Expression Pattern and Is Important for Asymmetric Cell Division and Nervous System Function.”. Genetics 189 (3): 907-21. doi:10.1534/genetics.110.123646.

Graham, Patricia, Judith Yanowitz, Jill Penn, Girish Deshpande, and Paul Schedl. (2011) 2011. “The Translation Initiation Factor eIF4E Regulates the Sex-Specific Expression of the Master Switch Gene Sxl in Drosophila Melanogaster.”. PLoS Genet 7 (7): e1002185. doi:10.1371/journal.pgen.1002185.

Kappes, Gretchen, Girish Deshpande, Brett Mulvey, Jamila Horabin, and Paul Schedl. (2011) 2011. “The Drosophila Myc Gene, Diminutive, Is a Positive Regulator of the Sex-Lethal Establishment Promoter, Sxl-Pe.”. Proc Natl Acad Sci U S A 108 (4): 1543-8. doi:10.1073/pnas.1017006108.

Gohl, Daryl, Tsutomu Aoki, Jason Blanton, Greg Shanower, Gretchen Kappes, and Paul Schedl. (2011) 2011. “Mechanism of Chromosomal Boundary Action: Roadblock, Sink, or Loop?”. Genetics 187 (3): 731-48. doi:10.1534/genetics.110.123752.

Bieli, Dimitri, Oguz Kanca, David Requena, Fisun Hamaratoglu, Daryl Gohl, Paul Schedl, Markus Affolter, Matthew Slattery, Martin Müller, and Carlos Estella. (2015) 2015. “Establishment of a Developmental Compartment Requires Interactions Between Three Synergistic Cis-Regulatory Modules.”. PLoS Genet 11 (10): e1005376. doi:10.1371/journal.pgen.1005376.

Bonchuk, Artem, Oksana Maksimenko, Olga Kyrchanova, Tatyana Ivlieva, Vladic Mogila, Girish Deshpande, Daniel Wolle, Paul Schedl, and Pavel Georgiev. (2015) 2015. “Functional Role of Dimerization and CP190 Interacting Domains of CTCF Protein in Drosophila Melanogaster.”. BMC Biol 13: 63. doi:10.1186/s12915-015-0168-7.

Bieli, Dimitri, Oguz Kanca, Daryl Gohl, Alexandru Denes, Paul Schedl, Markus Affolter, and Martin Müller. (2015) 2015. “The Drosophila Melanogaster Mutants Apblot and ApXasta Affect an Essential Apterous Wing Enhancer.”. G3 (Bethesda) 5 (6): 1129-43. doi:10.1534/g3.115.017707.

Deshpande, Girish, Elinor Willis, Sandip Chatterjee, Robert Fernandez, Kristen Dias, and Paul Schedl. 2014. “BMP Signaling and the Maintenance of Primordial Germ Cell Identity in Drosophila Embryos.”. PLoS One 9 (2): e88847. doi:10.1371/journal.pone.0088847.

Erokhin, Maksim, Pavel Elizar’ev, Aleksander Parshikov, Paul Schedl, Pavel Georgiev, and Darya Chetverina. (2015) 2015. “Transcriptional Read-through Is Not Sufficient to Induce an Epigenetic Switch in the Silencing Activity of Polycomb Response Elements.”. Proc Natl Acad Sci U S A 112 (48): 14930-5. doi:10.1073/pnas.1515276112.

Deshpande, Girish, Justinn Barr, Offer Gerlitz, Lyubov Lebedeva, Yulii Shidlovskii, and Paul Schedl. (2017) 2017. “Cells on the Move: Modulation of Guidance Cues During Germ Cell Migration”. Fly (Austin) 11 (3): 200-207. doi:10.1080/19336934.2017.1304332.

Fujioka, Miki, Hemlata Mistry, Paul Schedl, and James Jaynes. (2016) 2016. “Determinants of Chromosome Architecture: Insulator Pairing in Cis and in Trans.”. PLoS Genet 12 (2): e1005889. doi:10.1371/journal.pgen.1005889.

Deshpande, Girish, Ali Nouri, and Paul Schedl. (2016) 2016. “Wnt Signaling in Sexual Dimorphism.”. Genetics 202 (2): 661-73. doi:10.1534/genetics.115.177857.